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Publications

The consortium has published the following articles.

 2013

  1. Rigbolt KTG, Zarei M, Sprenger A, Becker AC, Diedrich B, Huang X, Eiselein S, Kristensen AR, Gretzmeier C, Andersen JS, Zi Z, Dengjel J. Characterization of early autophagy signaling by quantitative phosphoproteomics. Autophagy, conditionally accepted.
  2. Wanner N, Hartleben B, Herbach N, Goedel M, Stickel N, Zeiser R, Walz G, Moeller MJ, Grahammer F, Huber TB (2013) Role of podocyte regeneration in models of nephron loss and kidney aging. J Am Soc Nephrol, (accepted; August 2013)
  3. Canaud G, Bienaimé F, Viau A, Treins C, Baron W, Nguyen C, Burtin M, Berissi S, Giannakakis K, Muda AO, Zschiedrich S, Huber TB, Pontoglio M, Friedlander G, Legendre C, Pende M, Terzi F (2013) The essential role of Akt2 in podocytes. Nature Medicine 2013 Sep 22. doi: 10.1038/nm.3313. [Epub ahead of print. article
  4. Goek ON, Prehn C, Sekula P, Römisch-Margl W, Döring A, Gieger C, Heier M, Koenig W, Wang-Sattler R, Illig T, Suhre K, Adamski J, Köttgen A*, Meisinger C (2013) Serum metabolites associate with kidney function decline and incident chronic kidney disease in the general population. Nephrol Dial Transplant. 2013 Aug;28(8):2131-8. *corresponding author article
  5. Thedieck K, Holzwarth B, Prentzell MT, Boehlke C, Kläsener K, Ruf S, Sonntag AG, Maerz L, Grellscheid S-N, Kremmer E, Nitschke R, Kuehn EW, Jonker JW, Groen AK, Reth M, Hall MN, Baumeister R (2013) Inhibition of mTORC1 by Astrin and Stress Granules Prevents Apoptosis in Cancer Cells, Cell. 154, 859-874.article
  6. Bechtel W, Helmstadter M, Balica J, Hartleben B, Kiefer B, Hrnjic F, Schell C, Kretz O, Liu S, Geist F, Kerjaschki D, Walz G, Huber TB (2013) Vps34 deficiency reveals the importance of endocytosis for podocyte homeostasis. J Am Soc Nephrol, 2013 Apr;24(5):727-43.article
  7. Bechtel W, Helmstadter M, Balica J, Hartleben B, Schell C, Huber TB (2013) The class III phosphatidylinositol 3-kinase PIK3C3/VPS34 regulates endocytosis and autophagosome-autolysosome formation in podocytes. Autophagy, 2013 Apr 15;9(7). [Epub ahead of print].article
  8. Skanda D, Lebiedz D. (2013)  A robust optimization approach to experimental design for model discrimination of dynamical systems. Math. Prog. (in press), DOI:10.1007/s10107-012-0532-0.article
  9. Stegmaier J, Skanda D, Lebiedz D. (2013) Robust optimal design of experiments for model discrimination using an interactive software tool. PLoS One 8, e55723 , doi: 10.1371/journal.pone.0055723. article
  10. Boerries M, Grahammer F, Eiselein S, Buck M, Meyer C, Goedel M, Bechtel W, Zschiedrich S, Pfeifer D, Laloë D, Arrondel C, Gonçalves S, Krüger M, Harvey SJ, Busch H, Dengjel J, Huber TB. (2013) Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks. Kidney Int.  doi: 10.1038/ki.2012.487. article
  11. Bechtel W, Helmstädter M, Balica J, Hartleben B, Kiefer B, Hrnjic F, Schell C, Kretz O, Liu S, Geist F, Kerjaschki D, Walz G, Huber TB (2013). Vps34 deficiency reveals the importance of endocytosis for podocyte homeostasis. J Am Soc Nephrol 2013 Mar 14. [Epub ahead of print] (IF 9,66). article
  12. Petzoldt AG, Gleixner EM, Fumagalli A, Vaccari T, Simons M. (2013) Elevated expression of the V-ATPase C subunit triggers JNK-dependent cell invasion and overgrowth in a Drosophila epithelium. Dis Model Mech. Mar 8. article
  13. Schell C, Baumhakl L, Salou S, Conzelmann A, Helmstädter M, Wrede C, Grahammer F, Eimer S, Kerjaschki D, Walz G, Snapper S, Huber TB (2013). Neuronal Wiskott Aldrich Syndrome Protein (N-WASP) is required for podocyte foot process stabilization. J Am Soc Nephrol 2013 Mar 7. [Epub ahead of print] (IF 9,66). article


2012

  1. Fuellen G, Dengjel J, Hoeflich A, Hoeijemakers J, Kestler HA, Kowald A, Priebe S, Rebholz-Schuhmann D, Schmeck B, Schmitz U, Stolzing A, Sühnel J, Wuttke D, Vera J. (2012) Systems biology and bioinformatics in aging research: a workshop report. Rejuvenation Res. Dec;15(6):631-41. article
  2. Dalle Pezze P*, Sonntag AG*, Shanley DP°, Thedieck K°.  Response to Comment on "A Dynamic Network Model of mTOR Signaling Reveals TSC-Independent mTORC2 Regulation". SCIENCE Signaling (2012) 10 July Vol 5. article
  3. Huber TB, Edelstein CL, Hartleben B, Inoki K, Jiang M, Koya D, Kume S, Lieberthal W, Pallet N, Quiroga A, Ravichandran K, Susztak K, Yoshida S, Dong Z. (2012). Emerging role of autophagy in kidney function, diseases and aging. Autophagy. Jul 1;8(7). article
  4. Zarei M, Sprenger A, Gretzmeier C, Dengjel J. (2012) Combinatorial Use of Electrostatic Repulsion-Hydrophilic Interaction Chromatography (ERLIC) and Strong Cation Exchange (SCX) Chromatography for In-Depth Phosphoproteome Analysis. J Proteome Res. article
  5. Zhou W, Otto EA, Cluckey A, Airik R, Hurd TW, Chaki M, Diaz K, Lach FP, Bennett GR, Gee HY, Ghosh AK, Natarajan S, Thongthip S, Veturi U, Allen SJ, Janssen S, Ramaswami G, Dixon J, Burkhalter F, Spoendlin M, Moch H, Mihatsch MJ, Verine J, Reade R, Soliman H, Godin M, Kiss D, Monga G, Mazzucco G, Amann K, Artunc F, Newland RC, Wiech T, Zschiedrich S, Huber TB, Friedl A, Slaats GG, Joles JA, Goldschmeding R, Washburn J, Giles RH, Levy S, Smogorzewska A, Hildebrandt F. (2012) FAN1 mutations cause karyomegalic interstitial nephritis, linking chronic kidney failure to defective DNA damage repair. Nat Genet. 2012 Jul 8. article
  6. Helmstädter M, Lüthy K, Gödel M, Simons M, Ashish, Nihalani D, Rensing SA, Fischbach KF, Huber TB (2012). Functional study of mammalian Neph proteins in Drosophila melanogaster. PLoS One. 2012;7(7):e40300. Epub 2012 Jul 6.
  7. Schell C, Huber TB. (2012). New players in the pathogenesis of focal segmental glomerulosclerosis. Nephrol Dial Transplant. Jul 5. article
  8. Liu S, Hartleben B, Kretz O, Wiech T, Igarashi P, Mizushima N, Walz G and Huber TB (2012). Autophagy plays a critical role in kidney tubule maintenance, aging and ischemia-reperfusion injury. Autophagy. May.8:51-12. article
  9. Inoki K, Huber TB. (2012). mTor signaling in the podocyte. Curr Opin Nephrol Hypertens 2012 May;21(3):251-7. article
  10. Goek ON, Döring A, Gieger C, Heier M, Koenig W, Prehn C, Römisch-Margl W, Wang-Sattler R, Illig T, Suhre K, Sekula P, Zhai G, Adamski J, Köttgen A, Meisinger C. (2012) Serum Metabolite Concentrations and Decreased GFR in the General Population. Am J Kidney Dis. Mar 29. article
  11. Dalle Pezze P, Sonntag AG, Thien A, Prentzell MT, Gödel M, Fischer S, Neumann-Haefelin E, Huber TB, Baumeister R, Shanley DP, Thedieck K (2012) A Dynamic Network Model of mTOR Signaling Reveals TSC-Independent mTORC2 Regulation. SCIENCE Signaling  27 March Vol 5 Issue 217 ra25 article
    related information: Perspective, Editorial
  12. Sonntag AG , Dalle Pezze P, Shanley DP, Thedieck K (2012) A modelling-experimental approach reveals IRS dependent regulation of AMPK by Insulin. FEBS J. Mar 27. article 
  13. Dumit VI and Dengjel J (2012) Autophagosomal protein dynamics and influenza virus infection. Front. Immun. 3:43. March 14 article 
  14. Dengjel J, Høyer-Hansen M, Nielsen MO, Eisenberg T, Harder LM, Schandorff S, Farkas T, Kirkegaard T, Becker AC, Schroeder S, Vanselow K, Lundberg E, Nielsen MM, Kristensen AR, Akimov V, Bunkenborg J, Madeo F, Jäättelä M, Andersen JS. (2012) Identification of autophagosome-associated proteins and regulators by quantitative proteomic analysis and genetic screens. Mol Cell Proteomics. Feb 6 article 
  15. Linkermann A, Bräsen JH, Himmerkus N, Liu S, Huber TB, Kunzendorf U, Krautwald S. (2012). Rip1 (Receptor-interacting protein kinase 1) mediates necroptosis and contributes to renal ischemia/reperfusion injury. Kidney Int. Jan 11. article

 

2011

  1. Engelke R, Becker AC, Dengjel J (2011) The degradative inventory of the cell: proteomic insights. Antioxid Redox Signal. Nov 10, article
  2. Riediger F, Quack I, Qadri F, Hartleben B, Park JK, Potthoff SA, Sohn D, Sihn G, Rousselle A, Fokuhl V, Maschke U, Purfürst B, Schneider W, Rump LC, Luft FC, Dechend R, Bader M, Huber TB, Nguyen G, Muller DN (2011) Prorenin receptor is essential for podocyte autophagy and survival. J Am Soc Nephrol. Dec;22(12):2193-202. article
  3. Zarei M, Sprenger A, Metzger F, Gretzmeier C, Dengjel J (2011) Comparison of ERLIC-TiO2, HILIC-TiO2, and SCX-TiO2 for global phosphoproteomics approaches. J Proteome Res., 10(8):3474-83. article
  4. Gödel M, Hartleben B, Herbach N, Lu S, Debreczeni-Mór A, Liu S, Lindenmeyer MT, Rastaldi MP, Hartleben G, Wiech T, Fornoni A, Nelson RG, Kretzler M, Wanke R, Pavenstädt H, Kerjaschki D, Cohen CD, Hall MN, Rüegg MA, Inoki K, Walz G, and Huber TB (2011) Role of mTOR in podocyte function and diabetic nephropathy in human and mice. J Clin Invest. 121(6):2197-209. article
  5. Inoki K, Mori H, Wang J, Suzuki T, Hong SK, Yoshida S, Blattner SM, Ikenoue T, Rüegg MA, Hall MN, Kwiatkowski DJ, Rastaldi MP, Huber TB, Kretzler M, Holzman LB, Wiggins RC and Guan KL (2011) mTORC1 activation in podocytes is a critical step in the development of diabetic nephropathy. J Clin Invest. 121(6):2181-96. article

 

 

 

 

 

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